RnoEX0051371 @ rn6
Exon Skipping
Gene
ENSRNOG00000012094 | Ltbp2
Description
latent transforming growth factor beta binding protein 2 [Source:RGD Symbol;Acc:68380]
Coordinates
chr6:108506104-108511964:-
Coord C1 exon
chr6:108511842-108511964
Coord A exon
chr6:108506790-108506915
Coord C2 exon
chr6:108506104-108506247
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGGTCCCCATTTCCCCTCAGACA
3' ss Score
7.82
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATGTTGATGAATGTGCAACCACAGAGCCGTGTCTGGGAGGACACTGTGTCAACACCGAGGGCTCCTTCAACTGTCTGTGTGAGACTGGCTTCCAGCCCGCCCCAGACAGTGGAGAGTGTGTGG
Seq A exon
ACATAGATGAATGTGCAAATGATACTGTGTGTGGGAACCATGGCTTCTGTGACAATACGGATGGCTCCTTCCGCTGCCTGTGTGACCAGGGCTTCGAGACCTCACCCTCAGGCTGGGAGTGTGTTG
Seq C2 exon
ATGTGAACGAGTGTGAGCTCATGCTGGCAGTGTGTGGGGATGCACTCTGCGAGAACGTGGAAGGCTCCTTCCTGTGCCTTTGTGCCAGTGACCTTGAGGAGTATGATGCAGAAGAAGGACACTGCCGTCCTCGGGTGGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012094-'38-33,'38-32,41-33
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=WD(100=95.2),PF0764510=EGF_CA=PU(0.1=0.0)
A:
PF0764510=EGF_CA=WD(100=95.3),PF0764510=EGF_CA=PU(0.1=0.0)
C2:
PF0764510=EGF_CA=WD(100=85.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGATGAATGTGCAACCAC
R:
GACGGCAGTGTCCTTCTTCTG
Band lengths:
251-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]