BtaEX0021919 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12738835-12746508:-
Coord C1 exon
chr10:12746362-12746508
Coord A exon
chr10:12740584-12740712
Coord C2 exon
chr10:12738835-12738963
Length
129 bp
Sequences
Splice sites
3' ss Seq
AGGCTATCCTGTGCCCACAGTGT
3' ss Score
6.04
5' ss Seq
AGGGTAAGC
5' ss Score
9.04
Exon sequences
Seq C1 exon
GCATCCACTGTGACAGCACGTGTCCCCCCGGACGCTGGGGCCCCAACTGCTCTGTGTCCTGCAGCTGTGAGAATGGCGGTTCCTGCTCCCCGGAGGACGGGAGCTGCGAGTGTGCCCCGGGCTTCCGAGGACCCCTGTGCCAGAGAG
Seq A exon
TGTGTGCTGGAGGGCACTTTGGGCAGGACTGTGCCCAGCTCTGCTCCTGTGCCAACAACGGCACCTGCAGCCCCATCGATGGCTCCTGCCAATGCTTCCCTGGATGGATCGGCAAAGACTGCTCACAGG
Seq C2 exon
GCTGCCCAGCAGCGTTTTATGGGAAGGACTGCGGGCGTGTGTGCCAGTGTCAGAACGGCGCCAGCTGTGACCACATCAGCGGCAAGTGCACCTGCCGCACAGGCTTTACCGGGGAACACTGTGAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140_MULTIEX2-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(65.9=58.0)
A:
PF0005319=Laminin_EGF=PU(69.0=65.9)
C2:
PF0005319=Laminin_EGF=PU(70.2=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGCCCCAACTGCTC
R:
TCTGCTCACAGTGTTCCCCG
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development