BtaEX0021920 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000034140 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:12738835-12740712:-
Coord C1 exon
chr10:12740584-12740712
Coord A exon
chr10:12739451-12739579
Coord C2 exon
chr10:12738835-12738963
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGCATCCCACCCACCCCCAGCTT
3' ss Score
6.21
5' ss Seq
AGCGTAAGC
5' ss Score
6.06
Exon sequences
Seq C1 exon
TGTGTGCTGGAGGGCACTTTGGGCAGGACTGTGCCCAGCTCTGCTCCTGTGCCAACAACGGCACCTGCAGCCCCATCGATGGCTCCTGCCAATGCTTCCCTGGATGGATCGGCAAAGACTGCTCACAGG
Seq A exon
CTTGCCCACCTGGGTTCTGGGGCCCCGCCTGCTTCCACACATGCAGCTGCCACAACGGGGCGAGCTGCAGCGCCGAGGATGGGGCCTGCCACTGCACCCCTGGTTGGACCGGACTCTTCTGCACGCAGC
Seq C2 exon
GCTGCCCAGCAGCGTTTTATGGGAAGGACTGCGGGCGTGTGTGCCAGTGTCAGAACGGCGCCAGCTGTGACCACATCAGCGGCAAGTGCACCTGCCGCACAGGCTTTACCGGGGAACACTGTGAGCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000034140_MULTIEX2-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(69.0=65.9)
A:
PF0005319=Laminin_EGF=PD(28.6=27.3)
C2:
PF0005319=Laminin_EGF=PU(70.2=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACTTTGGGCAGGACTGTG
R:
GCTCACAGTGTTCCCCGGTAA
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development