MmuEX0028584 @ mm9
Exon Skipping
Gene
ENSMUSG00000036466 | Megf11
Description
multiple EGF-like-domains 11 [Source:MGI Symbol;Acc:MGI:1920951]
Coordinates
chr9:64537809-64539730:+
Coord C1 exon
chr9:64537809-64537937
Coord A exon
chr9:64539028-64539156
Coord C2 exon
chr9:64539602-64539730
Length
129 bp
Sequences
Splice sites
3' ss Seq
CACCCACCCCACCCCCACAGCCT
3' ss Score
7.03
5' ss Seq
AGCGTAAGC
5' ss Score
6.06
Exon sequences
Seq C1 exon
TGTGTGCTGGAGGGCACTTCGGGCAGGACTGTGCCCAGCTCTGTTCCTGTGCCAACAATGGGACCTGCAGCCCCATCGATGGCTCCTGTCAGTGCTTCCCTGGGTGGATTGGCAAGGACTGCTCACAGG
Seq A exon
CCTGCCCATCTGGGTTCTGGGGCTCTGCCTGCTTCCACACATGCAGCTGCCACAACGGGGCGAGCTGCAGCGCCGAGGATGGGGCCTGCCACTGCACCCCTGGCTGGACTGGACTCTTCTGCACGCAGC
Seq C2 exon
GTTGCCCTTCAGCATTTTTTGGGAAGGACTGTGGGCACATATGCCAGTGTCAGAATGGAGCCAGCTGTGACCACATCACTGGGAAATGCACCTGTCGAACAGGCTTCTCTGGCCGCCACTGTGAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036466_MULTIEX1-3/3=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(67.4=65.9)
A:
PF0005319=Laminin_EGF=PD(30.2=29.5)
C2:
PF0005319=Laminin_EGF=PD(27.1=30.2),PF0005319=Laminin_EGF=PU(60.9=65.1)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTCGGGCAGGACTGTG
R:
CTGTTCACAGTGGCGGCC
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: