DreEX0045919 @ danRer10
Exon Skipping
Gene
ENSDARG00000062686 | megf11
Description
multiple EGF-like-domains 11 [Source:ZFIN;Acc:ZDB-GENE-060503-252]
Coordinates
chr18:19179172-19183200:-
Coord C1 exon
chr18:19183082-19183200
Coord A exon
chr18:19180047-19180175
Coord C2 exon
chr18:19179172-19179300
Length
129 bp
Sequences
Splice sites
3' ss Seq
CGGTGTCTCTGGCTCCGCAGTTT
3' ss Score
7.96
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
TGGAAAATTTGGGAAAGCCTGCGCTGAGATCTGTCTGTGCACTAACAATGGAACCTGCAATCCTATTGATGGCTCTTGCCAATGCTTCCCAGGCTGGACCGGAGACGACTGCTCACAGA
Seq A exon
TTTGTCCCATAGGCCAGTGGGGCCCCGACTGCTTGAACTCATGTAACTGTCACAACGGAGCCCAATGTAGTGCCTACGACGGAGAGTGCAGGTGCAGCCTGGGCTGGACTGGCCTCTACTGCACACAGC
Seq C2 exon
GCTGTCCCTCAGGGTTTTATGGGCGAGACTGTGCAGAGGTGTGCCGCTGTCAAAATGGAGCTGACTGTGATCATATCACTGGCCAGTGTGCCTGTCGGACTGGCTTTATTGGGACCAACTGTGAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062686_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=70.5)
A:
NO
C2:
PF0005319=Laminin_EGF=PU(70.2=75.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATTTGGGAAAGCCTGCGC
R:
TCTGTTCACAGTTGGTCCCAA
Band lengths:
245-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]