RnoEX0053784 @ rn6
Exon Skipping
Gene
ENSRNOG00000010634 | Megf11
Description
multiple EGF-like-domains 11 [Source:RGD Symbol;Acc:1582797]
Coordinates
chr8:70168233-70170162:+
Coord C1 exon
chr8:70168233-70168361
Coord A exon
chr8:70169462-70169590
Coord C2 exon
chr8:70170034-70170162
Length
129 bp
Sequences
Splice sites
3' ss Seq
ATCCCACCCACCCCCCACAGCCT
3' ss Score
7.22
5' ss Seq
AGCGTAAGC
5' ss Score
6.06
Exon sequences
Seq C1 exon
TGTGTGCTGGAGGGCACTTTGGGCAGGACTGTGCCCAGCTCTGTTCCTGTGCCAACAACGGGACCTGCAGCCCCATTGATGGCTCCTGTCAATGCTTCCCTGGATGGACTGGCAAGGACTGCTCACAGG
Seq A exon
CCTGCCCATCTGGGTTCTGGGGCTCTGCCTGCTTCCACACATGCAGCTGCCACAACGGGGCGAGCTGCAGCGCCGAGGATGGGGCCTGCCACTGCACCCCTGGCTGGACCGGACTCTTCTGCACGCAGC
Seq C2 exon
GTTGCCCTGCAGCATTTTTTGGGAAGGATTGTGGGCACATATGCCAGTGTCAGAATGGAGCCAGCTGTGACCACATCACTGGGAAATGCACCTGTCGAACAGGCTTCTCTGGGCGCCACTGTGAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010634_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(67.4=65.9)
A:
PF0005319=Laminin_EGF=PD(30.2=29.5)
C2:
PF0005319=Laminin_EGF=PU(67.4=65.9)
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTTTGGGCAGGACTGTGC
R:
CTGTTCACAGTGGCGCCC
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]