MmuEX0028582 @ mm9
Exon Skipping
Gene
ENSMUSG00000036466 | Megf11
Description
multiple EGF-like-domains 11 [Source:MGI Symbol;Acc:MGI:1920951]
Coordinates
chr9:64533687-64539730:+
Coord C1 exon
chr9:64533687-64533833
Coord A exon
chr9:64534170-64534304
Coord C2 exon
chr9:64539602-64539730
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTCCCCTCTGACACCCTCAGTCT
3' ss Score
6.01
5' ss Seq
AAGGTACCC
5' ss Score
9.16
Exon sequences
Seq C1 exon
GCATCCGCTGTGATAGCACGTGTCCTCCAGGTCGCTGGGGCCCCAACTGTTCAGTGTCCTGCAGCTGTGAGAACGGAGGTTCCTGCTCCCCGGAGGACGGGAGCTGCGAGTGTGCCCCTGGCTTTCGAGGACCCTTATGTCAGAGAA
Seq A exon
TCTGCCCACCAGGATTCTACGGCCATGGCTGCGCCCAGCCTTGTCCCCTCTGCGTGCACAGCAGGGGGCCCTGCCACCACATCAGTGGTATCTGTGAGTGCCTGCCAGGATTCTCTGGAGCCTTGTGCAACCAAG
Seq C2 exon
GTTGCCCTTCAGCATTTTTTGGGAAGGACTGTGGGCACATATGCCAGTGTCAGAATGGAGCCAGCTGTGACCACATCACTGGGAAATGCACCTGTCGAACAGGCTTCTCTGGCCGCCACTGTGAACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036466_MULTIEX1-1/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(68.8=66.0)
A:
PF0005319=Laminin_EGF=PD(29.2=30.4),PF126612=hEGF=WD(100=28.3)
C2:
PF0005319=Laminin_EGF=PD(27.1=30.2),PF0005319=Laminin_EGF=PU(60.9=65.1)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGATAGCACGTGTCCTCCAG
R:
CCAGAGAAGCCTGTTCGACAG
Band lengths:
250-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: