GgaEX1035867 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr10:20355389-20361549:-
Coord C1 exon
chr10:20361403-20361549
Coord A exon
chr10:20358704-20358838
Coord C2 exon
chr10:20355389-20355517
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTGTTTTGTCTTCAGTTT
3' ss Score
9.69
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GCATCCACTGTGACAATATGTGCACCCAGGGCCGCTGGGGACCGAACTGCTCCATCTCCTGTAGCTGTGAGAACGGGGGATCCTGTGCTCCGGAGGACGGCACCTGTGACTGTGCACCTGGCTACAGAGGACCCCTGTGCCAAAGAA
Seq A exon
TTTGCCCCCCTGGCTTCTATGGACACCACTGCAGCCAGCCATGCCCTCAGTGCGTGCACAGCAGCGGTCCCTGTCACCACGTGTCCGGGCACTGCGACTGCTTGCCAGGATTCTTCGGCGCGCTCTGCAACCAAG
Seq C2 exon
TGTGTCCCAGTGGAAAATATGGGAAGAACTGTGCTGAGCTCTGCCAGTGCACCGAGAACGGGACGTGCAATCCCATCGATGGGTCGTGCCAGTGCTTTCCAGGCTGGATAGGGAAGGACTGCTCCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631-'8-10,'8-9,9-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(61.7=58.0)
A:
PF0005319=Laminin_EGF=PD(36.2=37.0)
C2:
PF0005319=Laminin_EGF=PU(67.4=65.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAATATGTGCACCCAGGGC
R:
AGTCCTTCCCTATCCAGCCTG
Band lengths:
256-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]