DreEX6065232 @ danRer10
Exon Skipping
Gene
ENSDARG00000062686 | megf11
Description
multiple EGF-like-domains 11 [Source:ZFIN;Acc:ZDB-GENE-060503-252]
Coordinates
chr18:19183082-19201961:-
Coord C1 exon
chr18:19201815-19201961
Coord A exon
chr18:19194207-19194341
Coord C2 exon
chr18:19183082-19183210
Length
135 bp
Sequences
Splice sites
3' ss Seq
GTCCTTTGCCATTGTGACAGTTT
3' ss Score
5.9
5' ss Seq
AAGGCAAGT
5' ss Score
3.24
Exon sequences
Seq C1 exon
GCATCCACTGTGACAGCATCTGCCCGCAAGGCTTCTGGGGGTCCAACTGCTCCATGACCTGCTCATGCCAGAACGGAGGTTCCTGCTCTCCTGAAGATGGGACCTGTGTTTGCGCTCCTGGCTACCGAGGGACGTCCTGCAAGAGAA
Seq A exon
TTTGTCCTCCAGGTTTCTATGGGCACCGCTGCAGTCAGTTATGCCCACAATGTGTGCACAGCACTGGGCCTTGTCACCACGTCACGGGTCACTGTGAGTGCCTGGCCGGCTTCTTCGGCTCGCTCTGCAACCAAG
Seq C2 exon
TGTGTCCCAGTGGAAAATTTGGGAAAGCCTGCGCTGAGATCTGTCTGTGCACTAACAATGGAACCTGCAATCCTATTGATGGCTCTTGCCAATGCTTCCCAGGCTGGACCGGAGACGACTGCTCACAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062686-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(23.1=6.0),PF0005319=Laminin_EGF=PU(65.4=68.0)
A:
PF0005319=Laminin_EGF=PD(32.7=37.0)
C2:
PF079748=EGF_2=WD(100=70.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCACTGTGACAGCATCTGC
R:
CCTGGGAAGCATTGGCAAGAG
Band lengths:
248-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]