GgaEX1035867 @ galGal4
Exon Skipping
Gene
ENSGALG00000007631 | MEGF11
Description
multiple EGF-like-domains 11 [Source:HGNC Symbol;Acc:HGNC:29635]
Coordinates
chr10:17694135-17700295:-
Coord C1 exon
chr10:17700149-17700295
Coord A exon
chr10:17697450-17697584
Coord C2 exon
chr10:17694135-17694263
Length
135 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTGTTTTGTCTTCAGTTT
3' ss Score
9.69
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GCATCCACTGTGACAATATGTGCACCCAGGGCCGCTGGGGACCGAACTGCTCCATCTCCTGTAGCTGTGAGAACGGGGGATCCTGTGCTCCGGAGGACGGCACCTGTGACTGTGCACCTGGCTACAGAGGACCCCTGTGCCAAAGAA
Seq A exon
TTTGCCCCCCTGGCTTCTATGGACACCACTGCAGCCAGCCATGCCCTCAGTGCGTGCACAGCAGCGGTCCCTGTCACCACGTGTCCGGGCACTGCGACTGCTTGCCAGGATTCTTCGGCGCGCTCTGCAACCAAG
Seq C2 exon
TGTGTCCCAGTGGAAAATATGGGAAGAACTGTGCTGAGCTCTGCCAGTGCACCGAGAACGGGACGTGCAATCCCATCGATGGGTCGTGCCAGTGCTTTCCAGGCTGGATAGGGAAGGACTGCTCCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007631_MULTIEX1-3/13=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(61.7=58.0)
A:
PF0005319=Laminin_EGF=PD(36.2=37.0)
C2:
PF0005319=Laminin_EGF=PU(67.4=65.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAATATGTGCACCCAGGGC
R:
AGTCCTTCCCTATCCAGCCTG
Band lengths:
256-391
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]