BtaEX0022021 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026008 | METTL5
Description
Bos taurus methyltransferase like 5 (METTL5), mRNA. [Source:RefSeq mRNA;Acc:NM_001099135]
Coordinates
chr2:26586105-26592458:+
Coord C1 exon
chr2:26586105-26586187
Coord A exon
chr2:26591361-26591412
Coord C2 exon
chr2:26592409-26592458
Length
52 bp
Sequences
Splice sites
3' ss Seq
ATTAACATGTTTATGTTCAGCAT
3' ss Score
4.57
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGACAGATATGGCATTTCTGAAGACTGCTTTGGAAATGGCAAGAACCGCAGTATATTCTTTACACAAATCCTCAACTAGAGAA
Seq A exon
CATATTCAAAAGAAAGCTGCAGAGTGGAAGGTCAAGATAGATATTATTGCAG
Seq C2 exon
AGCTGCGATACGACCTGCCAGCATCATACAAGTTTCATAAAAAAAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026008_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=FE(19.4=100)
A:
PF051759=MTS=PD(7.2=55.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGATATGGCATTTCTGAAGACT
R:
TTTATGAAACTTGTATGATGCTGGCA
Band lengths:
124-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development