GgaEX0014330 @ galGal3
Exon Skipping
Gene
ENSGALG00000009676 | METTL5
Description
NA
Coordinates
chr7:20037208-20038412:+
Coord C1 exon
chr7:20037208-20037290
Coord A exon
chr7:20037619-20037670
Coord C2 exon
chr7:20038363-20038412
Length
52 bp
Sequences
Splice sites
3' ss Seq
AGCTCTGTTTAATACTGCAGCAT
3' ss Score
5.11
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGATGGATATGATCTTTCTGAAAACCGCTTTACAAATGGCAAAAACAGCTGTCTATTCCCTTCACAAGACTTCAACACGGCAG
Seq A exon
CATGTTCAAAAGAAAGCAGATGAATGGAAAGTGAAGATGGAAGTCATAGCAG
Seq C2 exon
AACTTAGGTATGACCTACCAGCATCATACAAGTTCCATAAGAAGAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009676-'5-11,'5-8,6-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=FE(18.1=100)
A:
PF051759=MTS=FE(11.4=100)
C2:
PF051759=MTS=PD(2.0=17.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGATATGATCTTTCTGAAAACCGC
R:
TTCTTATGGAACTTGTATGATGCTGG
Band lengths:
124-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]