HsaEX0038927 @ hg38
Exon Skipping
Gene
ENSG00000138382 | METTL5
Description
methyltransferase like 5 [Source:HGNC Symbol;Acc:HGNC:25006]
Coordinates
chr2:169812457-169819643:-
Coord C1 exon
chr2:169819561-169819643
Coord A exon
chr2:169815477-169815528
Coord C2 exon
chr2:169812457-169812506
Length
52 bp
Sequences
Splice sites
3' ss Seq
AACATATTATTTATGTTCAGCAT
3' ss Score
4.64
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGACAGATATGGCTTTTCTAAAGACTGCTTTGGAAATGGCAAGAACAGCAGTATATTCCTTACACAAATCCTCAACTAGAGAA
Seq A exon
CATGTTCAAAAGAAAGCTGCAGAATGGAAAATCAAGATAGATATTATAGCAG
Seq C2 exon
AACTTCGATATGACCTGCCAGCATCATACAAGTTTCACAAAAAGAAATCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138382_MULTIEX1-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063258=PrmA=PD(18.9=37.0)
A:
PF051759=MTS=PD(15.9=77.8)
C2:
PF051759=MTS=FE(12.9=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGATATGGCTTTTCTAAAGACT
R:
TTTGTGAAACTTGTATGATGCTGGC
Band lengths:
124-176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development