DreEX0046140 @ danRer10
Exon Skipping
Gene
ENSDARG00000068893 | mettl5
Description
methyltransferase like 5 [Source:ZFIN;Acc:ZDB-GENE-041010-21]
Coordinates
chr9:48430491-48433937:+
Coord C1 exon
chr9:48430491-48430672
Coord A exon
chr9:48431579-48431793
Coord C2 exon
chr9:48433888-48433937
Length
215 bp
Sequences
Splice sites
3' ss Seq
CAATATATTCCTTACTTTAGGTA
3' ss Score
7.9
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTTGTGTGTTGGATTTGACATCGATGAAGATGCCTTGGACATATTCAGAGGAAATGTTGAAGAGTTTGAACTGCCAAACATTGATGTGGTCCAGTGTGACGTGTGCTCGATTGGATCTTCTTATGCTAAGAAGTTTGACACGGTCATCATGAACCCGCCGTTCGGCACAAAACACAACCAGG
Seq A exon
GTATTGACATGCAGTTCCTGCAGACAGCGATTTCTATGGCAACCAGTGCAGTGTATTCCCTTCACAAGACCTCAACACGAGATGTAAGCTGCCACATTATGTCAAAGTTTAATACCTCTAACTGTTTAAATATATTATTAAGAAGACTTGCATTTTCCTGCAGCACATTCAGAAGAAAGCAAATGACTGGAAAGTGAAAATGGAAGTCATCGCAG
Seq C2 exon
AGCTTAGATACGACTTGCCGGCATCATATAAGTTCCACAAAAAGAAGTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068893_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF063258=PrmA=PD(15.5=17.6)
A:
PF051759=MTS=PD(18.7=82.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGTGTTGGATTTGACATCGA
R:
CGACTTCTTTTTGTGGAACTTATATG
Band lengths:
230-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]