HsaEX0038926 @ hg38
Exon Skipping
Gene
ENSG00000138382 | METTL5
Description
methyltransferase like 5 [Source:HGNC Symbol;Acc:HGNC:25006]
Coordinates
chr2:169815477-169821273:-
Coord C1 exon
chr2:169821092-169821273
Coord A exon
chr2:169819561-169819643
Coord C2 exon
chr2:169815477-169815528
Length
83 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTACTCTTCACAGGGA
3' ss Score
9.97
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GTTGTGTGTTGGATTTGACATAGATGAAGACGCATTGGAAATATTTAATAGGAATGCAGAAGAGTTTGAGTTAACAAATATTGACATGGTTCAATGTGATGTGTGCTTATTATCTAACAGAATGTCCAAGTCATTCGATACAGTAATTATGAATCCTCCCTTTGGGACCAAAAATAATAAAG
Seq A exon
GGACAGATATGGCTTTTCTAAAGACTGCTTTGGAAATGGCAAGAACAGCAGTATATTCCTTACACAAATCCTCAACTAGAGAA
Seq C2 exon
CATGTTCAAAAGAAAGCTGCAGAATGGAAAATCAAGATAGATATTATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138382-'11-12,'11-9,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=PU(51.1=97.8)
A:
PF063258=PrmA=PD(18.9=37.0)
C2:
PF051759=MTS=PD(15.9=77.8)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAATGCAGAAGAGTTTGAGT
R:
TCTTGATTTTCCATTCTGCAGCT
Band lengths:
170-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development