RnoEX6017324 @ rn6
Exon Skipping
Gene
ENSRNOG00000008469 | Mettl5
Description
methyltransferase like 5 [Source:RGD Symbol;Acc:1566062]
Coordinates
chr3:56104147-56109967:-
Coord C1 exon
chr3:56109786-56109967
Coord A exon
chr3:56108260-56108342
Coord C2 exon
chr3:56104147-56104198
Length
83 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTTACTCTTTACAGGGA
3' ss Score
10.24
5' ss Seq
GAAGTAAGC
5' ss Score
6.95
Exon sequences
Seq C1 exon
GTTGTGTGTTGGATTTGACATAGATGAAGATGCACTGGAAATATTTAATAAAAATGTGGAAGAGTTTGAGTTAACAAATGTCGATATGATTCAGTGTGATGTGTACTCATTATCTAGCAGAATGTCCAAGTTATTTGACACAGTAATTATGAATCCTCCCTTTGGGACCAAAAATAATAAAG
Seq A exon
GGACAGATATGGCTTTTCTGAAGACTGCTTTGGGAATGGCAAGAACAGCAGTGTATTCTTTACACAAGTCCTCAACTAGAGAA
Seq C2 exon
CATATTCAGAAGAAAGCTGCCGAGTGGAAAGTGAAGACAGAGATTATCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008469-'4-7,'4-5,5-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=FE(48.8=100)
A:
PF051759=MTS=PD(18.4=82.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGAAGAGTTTGAGTTAACAAATG
R:
TGTCTTCACTTTCCACTCGGC
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]