GgaEX1035990 @ galGal3
Exon Skipping
Gene
ENSGALG00000009676 | METTL5
Description
NA
Coordinates
chr7:20036661-20037670:+
Coord C1 exon
chr7:20036661-20036842
Coord A exon
chr7:20037208-20037290
Coord C2 exon
chr7:20037619-20037670
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGATTTCAGCACTCTTTTAGGGA
3' ss Score
2.94
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ATTGTGTGTGGGGTTTGACATAGATGCAGAAGCATTGGAAATATTCAACAGCAACCTTGAAGACTTTGAGCTCACAAATGTTGATGTGGTTCAGTGTGATGTCTCCTCTTTACCCGACAGCATGTCAGAGACTTTTGACACAGTTATCATGAACCCTCCTTTTGGTACCAAACATAATAAAG
Seq A exon
GGATGGATATGATCTTTCTGAAAACCGCTTTACAAATGGCAAAAACAGCTGTCTATTCCCTTCACAAGACTTCAACACGGCAG
Seq C2 exon
CATGTTCAAAAGAAAGCAGATGAATGGAAAGTGAAGATGGAAGTCATAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009676-'4-8,'4-5,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF051759=MTS=FE(40.9=100)
A:
PF051759=MTS=FE(18.1=100)
C2:
PF051759=MTS=FE(11.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAACCTTGAAGACTTTGAGCT
R:
CCATCTTCACTTTCCATTCATCTGC
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]