BtaEX0022526 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23031255-23034671:+
Coord C1 exon
chr13:23031255-23031355
Coord A exon
chr13:23031517-23031676
Coord C2 exon
chr13:23034592-23034671
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCGCCCCAACTCCCTCTTAGATG
3' ss Score
6.12
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AGGTGGGGAGGGAAGACGACGAGGAGGAGGAGGCGGAGGAGGCGGTGGAGGGGAGGTGGGGGGAGTCAGCAAGGACATGGCTCCTGACTCCTGTGCGGAAC
Seq A exon
ATGGTCTCTAGCGACCGGCCCGTGTCACTGGAGGACGAGGTCTCCCATAGTATGAAGGAGATGATTGGAGGCTGTTGCGTTTGCTCAGACGAGAGAGGCTGGGCCGAGAACCCGCTGGTTTATTGCGACGGGCACGGCTGCAGCGTCGCGGTGCATCAAG
Seq C2 exon
CTTGCTATGGCATTGTTCAAGTACCCACAGGACCATGGTTTTGCAGGAAATGTGAATCTCAGGAGAGAGCAGCCAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074-'3-1,'3-0,5-1
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.037 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF138311=PHD_2=PU(48.6=33.3)
C2:
PF138311=PHD_2=PD(48.6=66.7),PF138321=zf-HC5HC2H_2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGGAGGGAAGACGAC
R:
CTCTGGCTGCTCTCTCCTGAG
Band lengths:
178-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development