MmuEX0029208 @ mm10
Exon Skipping
Gene
ENSMUSG00000026743 | Mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:MGI Symbol;Acc:MGI:1329038]
Coordinates
chr2:18064636-18071204:+
Coord C1 exon
chr2:18064636-18064864
Coord A exon
chr2:18065035-18065194
Coord C2 exon
chr2:18071125-18071204
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCAACTCCCTCTTAGATG
3' ss Score
7.32
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CGCCGCCCCGGGCCCAGCGGGAGCCCCCCAGTGCGCCTGTGCGGAGGCCTGCTTGATTATGTGTGCCCTCCTCGGGCGGCGGCGTTAGCGGCCGGGTGGAGGTGGGGAGGGAGGACGCCGCGGAGGAGGAGGAGGAGGAGGAGACGGTGGCGGGGAGGTGGGGGGAGTCAGCAAGGACATGGCTCCTGACTCCTGTGCGGAACGTGAGTGACTGAGCGGCAAAGCCCGA
Seq A exon
ATGGTCTCTAGCGACCGGCCCGTGTCACTGGAGGACGAGGTCTCCCATAGTATGAAGGAAATGATTGGAGGCTGTTGCGTTTGCTCAGACGAGAGAGGCTGGGCCGAGAACCCGCTGGTTTATTGCGACGGGCACGGCTGCAGCGTCGCGGTGCATCAAG
Seq C2 exon
CTTGCTATGGCATTGTTCAAGTACCTACTGGACCGTGGTTTTGTAGGAAATGTGAATCTCAGGAGAGAGCAGCCAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026743-'3-12,'3-10,4-12
Average complexity
C1
Mappability confidence:
89%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.062 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF138311=PHD_2=PU(48.6=33.3)
C2:
PF138311=PHD_2=PD(48.6=66.7),PF138321=zf-HC5HC2H_2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTATGTGTGCCCTCCTCGG
R:
CTGGCTGCTCTCTCCTGAGAT
Band lengths:
251-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types