MmuEX0029208 @ mm9
Exon Skipping
Gene
ENSMUSG00000026743 | Mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:MGI Symbol;Acc:MGI:1329038]
Coordinates
chr2:17976898-17992831:+
Coord C1 exon
chr2:17976898-17976998
Coord A exon
chr2:17986662-17986821
Coord C2 exon
chr2:17992752-17992831
Length
160 bp
Sequences
Splice sites
3' ss Seq
CCCCCCCAACTCCCTCTTAGATG
3' ss Score
7.32
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
TGGAATATAAGCTCTCCCGACGTTCCTAGTTACTTTCAAGGTGGATTGTGTATTTTAAGGCTGATGGGAGCGTCTGGTTTTTGGAGGAAAAAGAAGAGAAG
Seq A exon
ATGGTCTCTAGCGACCGGCCCGTGTCACTGGAGGACGAGGTCTCCCATAGTATGAAGGAAATGATTGGAGGCTGTTGCGTTTGCTCAGACGAGAGAGGCTGGGCCGAGAACCCGCTGGTTTATTGCGACGGGCACGGCTGCAGCGTCGCGGTGCATCAAG
Seq C2 exon
CTTGCTATGGCATTGTTCAAGTACCTACTGGACCGTGGTTTTGTAGGAAATGTGAATCTCAGGAGAGAGCAGCCAGAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026743-'0-8,'0-7,4-8
Average complexity
C2
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.022 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF138311=PHD_2=PU(48.6=33.3)
C2:
PF138311=PHD_2=PD(48.6=66.7),PF138321=zf-HC5HC2H_2=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATATAAGCTCTCCCGACGT
R:
CTCTGGCTGCTCTCTCCTGAG
Band lengths:
179-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: