BtaEX0022527 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044074 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr13:23222534-23227026:+
Coord C1 exon
chr13:23222534-23222606
Coord A exon
chr13:23224892-23225046
Coord C2 exon
chr13:23226838-23227026
Length
155 bp
Sequences
Splice sites
3' ss Seq
AGGATTAATGTTTCCAACAGGTC
3' ss Score
7.05
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATCAAGATCTTGGAGACAATAGCCGTAGCCTTGCTGGCAGAGGAAGCTCACCCAGAGGAAGTCTCTCACCAAG
Seq A exon
GTCCCCTGTAAGCAACTTACAGATCCGCTATGACCAACCAGGCAACAGCAGTTTGGAAAACCTGCCCCCAGTAGCAGCCAGCATAGAGCAGCTTCTGGAGAGGCAGTGGAGTGAAGGACAGCAGTTTTTATTAGAACAGGGCACTCCTAGTGACA
Seq C2 exon
TTTTAGGGATGCTGAAGTCATTACATCAACTTCAAGTAGAAAATCGAAGATTAGAGGAACAGATTAAAAACTTGACTGCCAAAAAGGAACGCCTTCAATTATTGAATGCACAGCTCTCAGTGCCTTTTCCAACAATAACAGCAAACCCCAGCCCATCTCATCAAATGCATGCATTTCCAGCACAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044074_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.717 C2=0.703
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATAGCCGTAGCCTTGCTG
R:
TCTGTGCTGGAAATGCATGCA
Band lengths:
244-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development