RnoEX0054837 @ rn6
Exon Skipping
Gene
ENSRNOG00000022249 | Mllt10
Description
MLLT10, histone lysine methyltransferase DOT1L cofactor [Source:RGD Symbol;Acc:1310874]
Coordinates
chr17:84967382-84972256:+
Coord C1 exon
chr17:84967382-84967454
Coord A exon
chr17:84969763-84969917
Coord C2 exon
chr17:84972068-84972256
Length
155 bp
Sequences
Splice sites
3' ss Seq
AGAATGAATGTTTTTGACAGATC
3' ss Score
4.61
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATCAAGATCTCGGAGACAATACCCGCAGCCTGGTTGGTCGGGGCAGCTCCCCCCGAGGAAGCCTCTCTCCAAG
Seq A exon
ATCCCCTGTGAGCAACTTGCAGATTCGATATGATCAGCCAAGCAGCAGTGGTTTGGAAAGCCTGCCTCCAGTGGCAGTGAGTATTGAGCAGCTCTTGGAGAGGCAATGGAGCGAAGGGCAGCAGTTTTTATTAGAGCAGGGCACTCCGAGTGACA
Seq C2 exon
TTTTAGGAATGTTAAAGTCATTACATCAACTTCAAGTTGAAAATCGAAGATTAGAAGAACAGATTAAAAACTTGACTGCCAAAAAAGAACGTCTTCAGTTGTTGAACGCACAGCTTTCAGTGCCTTTCCCAGCAATAACGACAAACCCTAGTCCATCTCATCAGATACACACATACACAGCACAGACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022249-'39-42,'39-39,41-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.547 C2=0.625
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCGGAGACAATACCCGCA
R:
CAGTCTGTGCTGTGTATGTGTGT
Band lengths:
256-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]