GgaEX1036483 @ galGal4
Exon Skipping
Gene
ENSGALG00000007928 | MLLT10
Description
myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 [Source:HGNC Symbol;Acc:HGNC:16063]
Coordinates
chr2:17813329-17819974:-
Coord C1 exon
chr2:17819902-17819974
Coord A exon
chr2:17815432-17815586
Coord C2 exon
chr2:17813329-17813517
Length
155 bp
Sequences
Splice sites
3' ss Seq
AATTGCAATATTTTCAACAGATC
3' ss Score
6.71
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
ATCAAGATGTGGGAGATAACGGCCGCAGCCTTGCTGGCAGAGGAGGCTCGCCCAGAGGAAGTCTCTCGCCACG
Seq A exon
ATCCCCTGTAAGCAGCTTGCAGGTCCGCTATGACCAATCAGGAAACAACTGTGGGGACAGTTTGCCCCCGGTAGCAGCCAGCATAGAACAGCTGCTGGAGAGGCAATGGAGCGAAGGACAACAGTTCTTACTGGAACAAGGCACCCCCAGTGACA
Seq C2 exon
TTTTAGGAATGCTTAAATCATTGCACCAACTTCAGGTTGAAAACAGGAGGTTGGAAGAGCAGATCAAGAATCTGACTGCTAAAAAGGAACGGCTTCAGCTTCTCAATGCACAGCTTTCGGTGCCCTTTCCAACACTGACTTCAAATCCCAGCCCTTCTCATCAAGTACATGCCTTTCCTGTGCAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007928-'37-48,'37-47,41-48
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.679 C2=0.586
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGTGGGAGATAACGGCCG
R:
CTGCTTGCACAGGAAAGGCAT
Band lengths:
258-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]