DreEX0046780 @ danRer10
Exon Skipping
Gene
ENSDARG00000045401 | mllt10
Description
myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 [Source:ZFIN;Acc:ZDB-GENE-041114-176]
Coordinates
chr24:17055865-17062541:+
Coord C1 exon
chr24:17055865-17055937
Coord A exon
chr24:17057440-17057609
Coord C2 exon
chr24:17062350-17062541
Length
170 bp
Sequences
Splice sites
3' ss Seq
CTGTCTATAAATGATTTCAGGTC
3' ss Score
6.77
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
ATCAGGAGCTGGGAGACGGAGCTCTCGGCTTCTCCAGAAGAGGAAACTCACCAAAGACAAACCTCTCCCCTCG
Seq A exon
GTCTCCGCTGAGTGGGCTTCATATACGGTATGACGCAGGACCTATGGTTCCAGGGCTCGGGTCTGGTTCGGATACGCTGCCCCCTGCGGCCACCAGCATTGACCAGCTGCTGGAACGCCAGTGGAATGAAGGACAGCAGTTTCTTCTACAACAGGGTTCACAAGGAGATG
Seq C2 exon
TTCTGGCAATGCTGAAGTCCCTGCACCAGCTGCAGGTGGAAAACCGGCGCCTGGAGGAGCAAATCCGAACTCTCACCATGAAGAAGGAACGACTGCAGCTCTTGAGCGCTCAACTCTCTGTGCCTTTCACCCCTGCAAGCACCACGGCCACCACTGCCTCCTCTCCAATGTACCCCAGCAACACTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045401_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.655 C2=0.769
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAGGAGCTGGGAGACGGA
R:
GGGTACATTGGAGAGGAGGCA
Band lengths:
248-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]