BtaEX0023072 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047606 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr21:71356202-71359290:+
Coord C1 exon
chr21:71356202-71356295
Coord A exon
chr21:71358712-71358762
Coord C2 exon
chr21:71359164-71359290
Length
51 bp
Sequences
Splice sites
3' ss Seq
CACTGTCTGTCGTTGTATAGCCC
3' ss Score
6.92
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACGGCCAGTGGGAACGTGGAGGCCAAGGTGGTGTGCTTCTACCGGCGCCGCGACATCTCCAGCAGCCTCATCGCCCTGGCTGACAAGCATGCCA
Seq A exon
CCCTGTCAGTCTGCTATAAAACCGGATCGGGGGCCGACACCGGTGAGGAAG
Seq C2 exon
GAGAAATAGAGGAGGAGATGGAGAACCCGGAGATGGTGGACCTGCCCGAGAAGCTCAAGCACCAGCTGCGGCATCGGGAGTTGTTCCTGTCTAGACAGCTGGAATCTCTCCCCGCCACGCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047606_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.250 A=1.000 C2=0.419
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(19.7=100)
A:
PF0142613=BAH=FE(10.8=100)
C2:
PF0142613=BAH=FE(26.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATCTCCAGCAGCCTCATC
R:
GACAGGAACAACTCCCGATGC
Band lengths:
134-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development