HsaEX0040390 @ hg38
Exon Skipping
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr14:105445418-105450184:+
Coord C1 exon
chr14:105445418-105445511
Coord A exon
chr14:105449359-105449409
Coord C2 exon
chr14:105450058-105450184
Length
51 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTGTCTGTTATATAGCCC
3' ss Score
6.47
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACGGCCAATGGGAACGTGGAGGCCAAAGTGGTGTGCTTCTACCGGAGGCGGGACATCTCCAGCACCCTCATCGCCCTGGCCGACAAGCACGCAA
Seq A exon
CCCTGTCAGTCTGCTATAAGGCCGGACCGGGGGCGGACAACGGCGAGGAAG
Seq C2 exon
GGGAAATAGAAGAGGAAATGGAGAACCCGGAAATGGTGGACCTGCCCGAGAAACTAAAGCACCAGCTGCGGCATCGGGAGCTGTTCCTCTCCCGGCAGCTGGAGTCTCTGCCCGCCACGCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979_MULTIEX1-3/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (disopred):
C1=0.394 A=0.750 C2=0.846
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(19.3=100)
A:
PF0142613=BAH=FE(10.6=100)
C2:
PF0142613=BAH=FE(26.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAAAGTGGTGTGCTTCTA
R:
GGTGCTTTAGTTTCTCGGGCA
Band lengths:
137-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development