MmuEX0029872 @ mm9
Exon Skipping
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:114355199-114359164:+
Coord C1 exon
chr12:114355199-114355292
Coord A exon
chr12:114358422-114358472
Coord C2 exon
chr12:114359038-114359164
Length
51 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTGTCTGTTATGTAGCCC
3' ss Score
6.13
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACAGCCAACGGGAATGTGGAGGCCAAAGTGGTGTGTTTCTACAGAAGGCGGGACATTTCCAGCAGCCTCATCGCGCTGGCGGACAAGCATGCAA
Seq A exon
CCCTGTCAGTCTGCTATAGAGCCGGACCGGGGGCGGACACCGGCGAGGAAG
Seq C2 exon
GGGAAGTGGAGGAGGAGGTAGAAAACCCAGAGATGGTGGACCTGCCTGAGAAACTTAAGCATCAGCTGCGGCATCGAGAACTGTTCCTGTCTCGGCAGTTGGAGTCTCTGCCTGCCACCCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (disopred):
C1=0.412 A=1.000 C2=0.572
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(19.3=100)
A:
PF0142613=BAH=FE(10.6=100)
C2:
PF0142613=BAH=FE(26.1=100)
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTTCCAGCAGCCTCATCG
R:
CTGCCGAGACAGGAACAGTTC
Band lengths:
140-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types