RnoEX0056155 @ rn6
Exon Skipping
Gene
ENSRNOG00000004711 | Mta1
Description
metastasis associated 1 [Source:RGD Symbol;Acc:621018]
Coordinates
chr6:137929169-137933039:+
Coord C1 exon
chr6:137929169-137929262
Coord A exon
chr6:137932295-137932345
Coord C2 exon
chr6:137932913-137933039
Length
51 bp
Sequences
Splice sites
3' ss Seq
GCTGTCTGTCTGTTATGTAGCCC
3' ss Score
6.13
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ACAGCCAACGGGAATGTGGAGGCCAAAGTGGTGTGTTTCTACAGAAGGCGGGACATTTCCAGCAGCCTCATCGCGCTGGCTGACAAGCATGCAA
Seq A exon
CCCTGTCAGTCTGCTATAGAGCCGGACCGGGGGCGGACACCGGCGAGGAAG
Seq C2 exon
GGGAAGTGGAGGAGGAGGTAGAAAACCCAGAGATGGTAGACCTGCCTGAGAAACTTAAGCACCAGCTGCGGCATCGGGAACTGTTCCTCTCTCGGCAGTTGGAGTCTCTGCCTGCCACCCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004711_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(19.9=100)
A:
PF0142613=BAH=FE(10.9=100)
C2:
PF0142613=BAH=FE(26.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTTCCAGCAGCCTCATCG
R:
ACTGCCGAGAGAGGAACAGTT
Band lengths:
141-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]