HsaEX0040389 @ hg38
Exon Skipping
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr14:105438672-105450184:+
Coord C1 exon
chr14:105438672-105438739
Coord A exon
chr14:105445418-105445511
Coord C2 exon
chr14:105450058-105450184
Length
94 bp
Sequences
Splice sites
3' ss Seq
CCCCTGCCTTGCTGTTACAGACG
3' ss Score
10.01
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
ACTACGTCTACTTTGAGAACTCCTCCAGCAACCCATACCTGATCCGGAGAATCGAGGAGCTCAACAAG
Seq A exon
ACGGCCAATGGGAACGTGGAGGCCAAAGTGGTGTGCTTCTACCGGAGGCGGGACATCTCCAGCACCCTCATCGCCCTGGCCGACAAGCACGCAA
Seq C2 exon
GGGAAATAGAAGAGGAAATGGAGAACCCGGAAATGGTGGACCTGCCCGAGAAACTAAAGCACCAGCTGCGGCATCGGGAGCTGTTCCTCTCCCGGCAGCTGGAGTCTCTGCCCGCCACGCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979_MULTIEX1-1/3=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.003 A=0.394 C2=0.846
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(13.7=100)
A:
PF0142613=BAH=FE(19.3=100)
C2:
PF0142613=BAH=FE(26.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTCCTCCAGCAACCCAT
R:
CGGGCAGAGACTCCAGCT
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development