DreEX0047688 @ danRer10
Exon Skipping
Gene
ENSDARG00000007198 | mta1
Description
metastasis associated 1 [Source:ZFIN;Acc:ZDB-GENE-131121-353]
Coordinates
chr17:37597786-37623333:+
Coord C1 exon
chr17:37597786-37597853
Coord A exon
chr17:37601521-37601614
Coord C2 exon
chr17:37623207-37623333
Length
94 bp
Sequences
Splice sites
3' ss Seq
ACTCTCTTTCCGTTTTGCAGACG
3' ss Score
10.64
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
ATTATGTTTATTTCGAAAACTCCTCCAGTAACCCACTGCTGATCAGGCGAATAGAGGAACTCAACAAG
Seq A exon
ACGGCGAATGGGAACGTGGAGGCCAAAGTGGTGTGTTTCTACCGCCGCAGAGACATTTCCGCAACACTCATCGCCCTCGCTGACAAACATGCAC
Seq C2 exon
GAGAGATGGAAGAGGAGATGGAGAACCCTGAGATGGTGGATCTCCCAGAGAAGCAGAAGCATCAGCTGAGACACAGAGAACTCTTTCTCTCCAGACAGTTGGAATCTCTGCCCGCGACACACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007198-'2-4,'2-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.344 C2=0.372
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(15.3=100)
A:
PF0142613=BAH=FE(21.5=100)
C2:
PF0142613=BAH=FE(29.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAAACTCCTCCAGTAACCCA
R:
CGGGCAGAGATTCCAACTGTC
Band lengths:
169-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]