MmuEX6083289 @ mm10
Exon Skipping
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:113112146-113120261:+
Coord C1 exon
chr12:113112146-113112213
Coord A exon
chr12:113116988-113117081
Coord C2 exon
chr12:113120211-113120261
Length
94 bp
Sequences
Splice sites
3' ss Seq
ACTCTCTCTTGCTGTTACAGACA
3' ss Score
9.82
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
ACTATGTCTACTTTGAGAACTCCTCCAGCAACCCGTACCTGATCCGCAGGATTGAAGAGCTTAACAAG
Seq A exon
ACAGCCAACGGGAATGTGGAGGCCAAAGTGGTGTGTTTCTACAGAAGGCGGGACATTTCCAGCAGCCTCATCGCGCTGGCGGACAAGCATGCAA
Seq C2 exon
CCCTGTCAGTCTGCTATAGAGCCGGACCGGGGGCGGACACCGGCGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144-'2-8,'2-4,8-8=AN
Average complexity
A_C2
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.333 C2=1.000
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(13.7=100)
A:
PF0142613=BAH=FE(19.3=100)
C2:
PF0142613=BAH=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTACTTTGAGAACTCCTCCAGC
R:
CCCCGGTCCGGCTCTATAG
Band lengths:
95-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types