BtaEX0023069 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047606 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr21:71352590-71358762:+
Coord C1 exon
chr21:71352590-71352679
Coord A exon
chr21:71356202-71356295
Coord C2 exon
chr21:71358712-71358762
Length
94 bp
Sequences
Splice sites
3' ss Seq
AGCCCGCCTTGCTGTTGCAGACG
3' ss Score
8.36
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
Exon sequences
Seq C1 exon
GCTCTCCCCCAACCCTTTGCAGACTACGTCTACTTCGAGAACTCCTCCAGCAACCCGTACCTGATCCGGAGGATCGAGGAGCTCAACAAG
Seq A exon
ACGGCCAGTGGGAACGTGGAGGCCAAGGTGGTGTGCTTCTACCGGCGCCGCGACATCTCCAGCAGCCTCATCGCCCTGGCTGACAAGCATGCCA
Seq C2 exon
CCCTGTCAGTCTGCTATAAAACCGGATCGGGGGCCGACACCGGTGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047606-'0-3,'0-1,1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.133 A=0.250 C2=1.000
Domain overlap (PFAM):
C1:
PF0142613=BAH=PU(15.3=80.0)
A:
PF0142613=BAH=FE(19.7=100)
C2:
PF0142613=BAH=FE(10.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAACCCTTTGCAGACTAC
R:
GGCCCCCGATCCGGTTTTATA
Band lengths:
119-213
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development