GgaEX6043578 @ galGal4
Exon Skipping
Gene
ENSGALG00000002803 | MTA1
Description
metastasis-associated protein MTA1 [Source:RefSeq peptide;Acc:NP_001012971]
Coordinates
chr8:4049176-4052393:-
Coord C1 exon
chr8:4052298-4052393
Coord A exon
chr8:4049850-4049943
Coord C2 exon
chr8:4049176-4049200
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCACTTTTTTTCTTTTTCAGACC
3' ss Score
12.62
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
TTTAACGAATCTTTCTTCTTTTTGTCAGATTACGTCTACTTTGAAAATTCATCAAGTAACCCATATTTGATACGAAGAATAGAAGAACTCAATAAG
Seq A exon
ACCGCCAATGGAAATGTGGAAGCAAAGGTGGTGTGTTTCTACAGAAGAAGAGACATTTCAAGCACACTTATTGTATTGGCAGATAAACATGCAA
Seq C2 exon
CACTATCTATAGTTTTTGCTTTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002803-'0-3,'0-1,3-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0142613=BAH=PU(15.1=75.0)
A:
PF0142613=BAH=FE(19.5=100)
C2:
PF0142613=BAH=FE(5.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]