MmuEX6083289 @ mm9
Exon Skipping
Gene
ENSMUSG00000021144 | Mta1
Description
metastasis associated 1 [Source:MGI Symbol;Acc:MGI:2150037]
Coordinates
chr12:114350357-114358472:+
Coord C1 exon
chr12:114350357-114350424
Coord A exon
chr12:114355199-114355292
Coord C2 exon
chr12:114358422-114358472
Length
94 bp
Sequences
Splice sites
3' ss Seq
ACTCTCTCTTGCTGTTACAGACA
3' ss Score
9.82
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
ACTATGTCTACTTTGAGAACTCCTCCAGCAACCCGTACCTGATCCGCAGGATTGAAGAGCTTAACAAG
Seq A exon
ACAGCCAACGGGAATGTGGAGGCCAAAGTGGTGTGTTTCTACAGAAGGCGGGACATTTCCAGCAGCCTCATCGCGCTGGCGGACAAGCATGCAA
Seq C2 exon
CCCTGTCAGTCTGCTATAGAGCCGGACCGGGGGCGGACACCGGCGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021144-'2-3,'2-2,4-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.412 C2=1.000
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(13.7=100)
A:
PF0142613=BAH=FE(19.3=100)
C2:
PF0142613=BAH=FE(10.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTACTTTGAGAACTCCTCCAGC
R:
CCCCGGTCCGGCTCTATAG
Band lengths:
95-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: