RnoEX6029999 @ rn6
Exon Skipping
Gene
ENSRNOG00000004711 | Mta1
Description
metastasis associated 1 [Source:RGD Symbol;Acc:621018]
Coordinates
chr6:137924293-137932345:+
Coord C1 exon
chr6:137924293-137924639
Coord A exon
chr6:137929169-137929262
Coord C2 exon
chr6:137932295-137932345
Length
94 bp
Sequences
Splice sites
3' ss Seq
ACTCTCTCTTGCTGTTACAGACA
3' ss Score
9.82
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
TTGGGGGGCTTTCTTTTTTTTTAAGATTTATTTAATGTAGAGTGCTCTATCTGCATGTACACTAGCGTGCCAGAAGAGGGCACCAGATCACATAGATGGTTGTGAGCCACCATGCGGCTGCTGGGCATTGAACTCAGGACCTCCAGAAGAGCAACCAGTGCTTTTAACCACTGAGCCAGCTCTCCAGCCCCTCAGGGATGGGGGTAGGGTGCCTTAAAAATGGTGGGAATGGTGCTATGTGTTTATGTAAAACACATATATGCAAATCTCTGTTTGCAGACTATGTCTACTTTGAGAACTCCTCCAGCAACCCGTACCTGATCCGCAGGATTGAAGAGCTCAATAAG
Seq A exon
ACAGCCAACGGGAATGTGGAGGCCAAAGTGGTGTGTTTCTACAGAAGGCGGGACATTTCCAGCAGCCTCATCGCGCTGGCTGACAAGCATGCAA
Seq C2 exon
CCCTGTCAGTCTGCTATAGAGCCGGACCGGGGGCGGACACCGGCGAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004711-'0-3,'0-1,1-3=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0142613=BAH=PU(14.7=46.0)
A:
PF0142613=BAH=FE(19.9=100)
C2:
PF0142613=BAH=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGGTAGGGTGCCTTAAAA
R:
CCCCGGTCCGGCTCTATAG
Band lengths:
181-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]