HsaEX0040389 @ hg19
Exon Skipping
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:7410]
Coordinates
chr14:105905009-105916521:+
Coord C1 exon
chr14:105905009-105905076
Coord A exon
chr14:105911755-105911848
Coord C2 exon
chr14:105916395-105916521
Length
94 bp
Sequences
Splice sites
3' ss Seq
CCCCTGCCTTGCTGTTACAGACG
3' ss Score
10.01
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
ACTACGTCTACTTTGAGAACTCCTCCAGCAACCCATACCTGATCCGGAGAATCGAGGAGCTCAACAAG
Seq A exon
ACGGCCAATGGGAACGTGGAGGCCAAAGTGGTGTGCTTCTACCGGAGGCGGGACATCTCCAGCACCCTCATCGCCCTGGCCGACAAGCACGCAA
Seq C2 exon
GGGAAATAGAAGAGGAAATGGAGAACCCGGAAATGGTGGACCTGCCCGAGAAACTAAAGCACCAGCTGCGGCATCGGGAGCTGTTCCTCTCCCGGCAGCTGGAGTCTCTGCCCGCCACGCACATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.003 A=0.400 C2=0.787
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(13.7=100)
A:
PF0142613=BAH=FE(19.3=100)
C2:
PF0142613=BAH=PU(46.2=97.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACTCCTCCAGCAACCCAT
R:
CGGGCAGAGACTCCAGCT
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)