GgaEX6043578 @ galGal3
Exon Skipping
Gene
ENSGALG00000002803 | MTA1
Description
NA
Coordinates
chr8:4080502-4090716:-
Coord C1 exon
chr8:4090649-4090716
Coord A exon
chr8:4088201-4088294
Coord C2 exon
chr8:4080502-4080628
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCACTTTTTTTCTTTTTCAGACC
3' ss Score
12.62
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
Exon sequences
Seq C1 exon
ATTACGTCTACTTTGAAAATTCATCAAGTAACCCATATTTGATACGAAGAATAGAAGAACTCAATAAG
Seq A exon
ACCGCCAATGGAAATGTGGAAGCAAAGGTGGTGTGTTTCTACAGAAGAAGAGACATTTCAAGCACACTTATTGTATTGGCAGATAAACATGCAA
Seq C2 exon
GAGAAATGGAAGAAGAGATGGAAAACCCAGAAATGGTCGACTTGCCAGAGAAACAGAAGCATCAGTTACGACATCGTGAGTTATTTCTCTCGCGACAGCTGGAATCCCTGCCAGCCACACACATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002803-'8-8,'8-3,10-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (disopred):
C1=0.116 A=0.604 C2=0.749
Domain overlap (PFAM):
C1:
PF0142613=BAH=FE(15.4=100)
A:
PF0142613=BAH=FE(21.7=100)
C2:
PF0142613=BAH=FE(29.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCTACTTTGAAAATTCATCAAGT
R:
CCAGCTGTCGCGAGAGAAATA
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]