BtaEX0023224 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000035705 | MTMR8
Description
myotubularin related protein 8 [Source:HGNC Symbol;Acc:HGNC:16825]
Coordinates
chrX:101278515-101288657:+
Coord C1 exon
chrX:101278515-101278573
Coord A exon
chrX:101285752-101285952
Coord C2 exon
chrX:101288529-101288657
Length
201 bp
Sequences
Splice sites
3' ss Seq
CCTTTACTTGTATCTCTTAGGTG
3' ss Score
9.17
5' ss Seq
GAGGTGAAT
5' ss Score
5.37
Exon sequences
Seq C1 exon
AAAATAAAGATCCTGATAGAGAAGGAATGGATATCCATGGGCCACAAGTTCTCCCAAAG
Seq A exon
GTGTGGCCACCTGGATGGGGACTCTAAAGAAGTATCCCCTATTTTCACACAGTTCCTAGACTGTATCTGGCAATTAATGGAACAATTTCCATGTGCCTTTGAATTTAATGAAAATTTCCTGCTGGAAATTCATGACCATGTTTTCTCCTGCCAGTTTGGGAACTTCCTTGGAAACTGCCAGAAGGATCGAGATGATCTGAG
Seq C2 exon
AATATATGAGAAAACCCATTCAGTGTGGCCTTTCTTGGTTCAGAGGAAACCAGACTTCAGGAACCCTCTCTATAAAGGCTTCACTATGTATGGGGTACTAAATCCTAGTACTGTGCCCTACAACATTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035705_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(5.5=100)
A:
PF066029=Myotub-related=PD(19.1=97.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCTGATAGAGAAGGAATGGA
R:
TGAATGTTGTAGGGCACAGTACT
Band lengths:
181-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development