GgaEX1037508 @ galGal3
Exon Skipping
Gene
ENSGALG00000007590 | MTMR8
Description
NA
Coordinates
chr4:11729947-11732190:+
Coord C1 exon
chr4:11729947-11729996
Coord A exon
chr4:11731448-11731648
Coord C2 exon
chr4:11732062-11732190
Length
201 bp
Sequences
Splice sites
3' ss Seq
TTTTGTTTGCATCTGTCTAGGTG
3' ss Score
9.39
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
Exon sequences
Seq C1 exon
GTCCTTATAGAAAAGGAGTGGATTGCAATGGGCCATAAGTTTTCACACAG
Seq A exon
GTGTGGCCATTTGGATGGTGACCCAAAGGAAGTGTCCCCTGTCTTCACTCAGTTCATTGAGTGCGTCTGGCAGCTCATGCAGCAGTTCCCTTGTACGTTTGAGTTTAATGAACATTTCCTTCTGGAAATCCATGATCATGTCTATTCCTGCCAGTTTGGAAACTTCCTTGGGACCTGCCATAAGGAGCGTGAAGATCTGAA
Seq C2 exon
AATCTTTGAGAAGACCCACTCTCTGTGGCCTTTCCTCTTACAGAAGAAGCAGGAATTGAGAAATCCTTTGTACAGAGGATTTACAGCTTACAAAGAGCTTCAACCCAACACGCTACCTTTTAGTTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007590-'11-11,'11-10,13-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(4.7=100)
A:
PF066029=Myotub-related=PD(19.2=97.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGAAAAGGAGTGGATTGCAATGGG
R:
TGAAAACTAAAAGGTAGCGTGTTGG
Band lengths:
172-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]