DreEX6010251 @ danRer10
Exon Skipping
Gene
ENSDARG00000008592 | mtmr8
Description
myotubularin related protein 8 [Source:ZFIN;Acc:ZDB-GENE-040426-1016]
Coordinates
chr5:21528845-21529500:-
Coord C1 exon
chr5:21529451-21529500
Coord A exon
chr5:21529072-21529272
Coord C2 exon
chr5:21528845-21528973
Length
201 bp
Sequences
Splice sites
3' ss Seq
TGTATGTGTTTGTGCTCTAGGTG
3' ss Score
11.04
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GTTTTAATAGAAAAAGAGTGGATTTCTTTTGGTCATAAATTCAGTCACAG
Seq A exon
GTGTGGCCATCTGGACAGCGACCCAAAGGAAGCGTCTCCGGTGTTCACCCAGTTCCTGGAGTGCGTCTGGCAGCTGTCACAACAATTCCCCTGTGTGTTTGAGTTCAACGAACATTACCTGATAGAAATACATGACCAAGTCTACGCCTGCCAGTACGGAAACTTCATCGGCAACTGTCAGAAGGAGAGGCTAGACATGAG
Seq C2 exon
GTTGCATGAAAAAACCTTTTCCCTGTGGCCGCATCTTCTGGAAAACCAGCATCAGTATCGAAACCCTTTGTACCGGCGCTCATTAGAAAGCACAGTTCTCAGACCAAGCACTTTACCACTACACTTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008592-'18-15,'18-14,19-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF066029=Myotub-related=FE(4.7=100)
A:
PF066029=Myotub-related=PD(19.2=97.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGAGTGGATTTCTTTTGGTCAT
R:
AAGTGTAGTGGTAAAGTGCTTGGT
Band lengths:
164-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]