BtaEX0023598 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039803 | MYO7B
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr2:4829227-4831048:-
Coord C1 exon
chr2:4830931-4831048
Coord A exon
chr2:4830718-4830844
Coord C2 exon
chr2:4829227-4829405
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCCCTCTCTCCTTCTGCCAGGCC
3' ss Score
10.26
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GCACCCTATACCCAGAAGCGGGCCAGGCCACTGACTGTGCAGGAGCAGGTGGTGGACACTGCCTGCCTGAAGTGGCCGCTGCTCTTCTCTCGGCTCTTTGAAGTCACCACACTCTCAG
Seq A exon
GCCCCCAACTGCCCAAGACTCAGCTGATCTTGGCTGTTAACTGGAAGGGGCTGTACTTCCTGGACCAGAAAGAGAAGGTGCTCCTAGAACTCTCTTTCATTGAGGTCATGAGTCTGATCACCAACAG
Seq C2 exon
GGAGGCCCGGGGTGGGCAGAGGCTGATGCTGTCCACGCTGCACGAAGAGGAGTATGAGTTCCGGTCCCCCAGCAGTGTGGCCGTCGCCGAGCTGGTGGCCATGTTTCTGGAGGGCTTGAAGGAGAGGTCCGTGTTCGCCATGGCCCTGCAGGACAGGAAGGCCACAGGTACCCAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039803-'41-44,'41-43,42-44
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.131
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF146041=SH3_9=PU(4.0=3.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCCTATACCCAGAAGCGGG
R:
CTCTCCTTCAAGCCCTCCAGA
Band lengths:
243-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development