DreEX0048765 @ danRer10
Exon Skipping
Gene
ENSDARG00000099871 | myo7aa
Description
myosin VIIAa [Source:ZFIN;Acc:ZDB-GENE-020709-1]
Coordinates
chr18:3157814-3160794:+
Coord C1 exon
chr18:3157814-3157931
Coord A exon
chr18:3158634-3158760
Coord C2 exon
chr18:3160625-3160794
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTGCCGTATTGTGTTTTTAGGTC
3' ss Score
10.57
5' ss Seq
CAAGTACGA
5' ss Score
5.39
Exon sequences
Seq C1 exon
GGCGTCTACACTCAGAAGAGGGTGGATCCTCAGAAAGTCAAGGAGGAAGTTGTTGATTTTGCACGTTATAAGTGGCCTTTATTATTCTCCAGATTCTACGAGGCCTTCAAGTTTTCAG
Seq A exon
GTCCTAGTTTACCCAAGAATGATGTGATCGTGGCTGTAAACTGGACCGGTGTGTATTTTGTGGACGAGCAGGAGCAGGTTCTTCTGGAGCTCTCCTTCCCAGAGATCACAGCCGTGTCCAGCAGCAA
Seq C2 exon
AGGCGGGAAACTTCAGGCTCAGAGCTTCACTTTGGCCACCATTAAAGCAGACGAGTTCACCTTCACCTCTAATAATGCAGAGGACATTCGGGACCTGGTGGTCACTTTCCTGGAGGGGCTGCGCAAGAGGTCAAAGTTCGTCGTGGCCTTGCAGGACAATCCCAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099871-'36-34,'36-33,37-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(13.0=32.5)
A:
NO
C2:
PF146041=SH3_9=PU(13.6=13.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCAGAAGAGGGTGGATCCT
R:
CGAACTTTGACCTCTTGCGCA
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]