GgaEX6006884 @ galGal4
Exon Skipping
Gene
ENSGALG00000000733 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr1:192367148-192367944:-
Coord C1 exon
chr1:192367827-192367944
Coord A exon
chr1:192367422-192367548
Coord C2 exon
chr1:192367148-192367317
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGCCTTGCCTTCAATCTAGGGC
3' ss Score
8.6
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GGAATTTATACTCAGAAGAGAACAGACCCCAAAAAAGTCAAGGAGGAGGTGGTGGATTTTGCACGTTTCAAGTGGCCTTTGCTGTTTTCTCGGTTTTACGAAGCCTTCAAATTCTCAG
Seq A exon
GGCCAAGCCTACCTAAAAATGATGTAATTGTGGCTGTCAACTGGACAGGAGTGTACTTTGTGGATGAGCAGGAGCAGGTTCTCTTGGAGCTCTCTTTTCCAGAGATCACAGCTGTGTCAAGCAGCAG
Seq C2 exon
GGGGGGAAAGCTGCAAGGGCAGAGTTTCACCTTGGCCACCATTAAAGCAGATGAATACACTTTCACCTCCAACAATGCAGAGGATATCCGGGACCTGGTAGTGACATTCCTTGAGGGACTAAGAAAAAGATCCAAGTATGTGGTCACTCTCCAAGACAACCCAAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000733-'45-45,'45-44,46-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(10.2=25.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGTGGATTTTGCACGTT
R:
CAGGGTTTGGGTTGTCTTGGA
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]