BtaEX6060063 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003955 | MYO7A
Description
myosin VIIA [Source:HGNC Symbol;Acc:HGNC:7606]
Coordinates
chr15:57397904-57400229:+
Coord C1 exon
chr15:57397904-57398021
Coord A exon
chr15:57398759-57398885
Coord C2 exon
chr15:57399967-57400229
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGCCCCTGTCTCTGCCCCAGGCC
3' ss Score
10.34
5' ss Seq
TAGGTCAGT
5' ss Score
6.39
Exon sequences
Seq C1 exon
GGAATTTATGCCCAGAGGAGAACTGATGCTCAGAAGGTCAAAGAGGATGTGGTCAACTATGCCCGCTTCAAGTGGCCCTTGCTCTTCTCCAGGTTTTATGAAGCCTACAAGTTCTCAG
Seq A exon
GCCCCAACCTCCCCAAGAACGACGTCATTGTGGCGGTCAACTGGACAGGTGTCTACTTTGTGGATGAGCAGGAGCAGGTGCTTCTGGAGCTGTCCTTCCCCGAGATCATGGCCGTGTCCAGCAGTAG
Seq C2 exon
GGAGTGCCGTATCTTGCTCTCGCTGGGCTGCTCTGACCTGGGCTGTGCTGGACTGACCCCGACGGGGCCCTGTTCTCCGTGTTGGTCATGCAGGGGAGCGAAGTTGGCGGCCCCCAGCTTCACGCTGGCCACCATCAAGGGGGATGAGTACACCTTCACCTCCAGCAATGCTGAGGACATCCGTGACCTGGTGGTCACCTTCCTGGAGGGGCTCCGCAAGAGGTCTAAGTATGTGGTGGCCCTGCAGGACAACCCCAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003955-'34-38,'34-37,35-38=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF146041=SH3_9=PU(13.6=9.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGTGGTCAACTATGCCCG
R:
CATTGCTGGAGGTGAAGGTGT
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]