MmuEX6012407 @ mm9
Exon Skipping
Gene
ENSMUSG00000030761 | Myo7a
Description
myosin VIIA [Source:MGI Symbol;Acc:MGI:104510]
Coordinates
chr7:105214122-105215757:-
Coord C1 exon
chr7:105215640-105215757
Coord A exon
chr7:105214851-105214977
Coord C2 exon
chr7:105214122-105214291
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGCCTCTGTCACTGTCGCAGGCC
3' ss Score
6.99
5' ss Seq
TAGGTGGGG
5' ss Score
3.33
Exon sequences
Seq C1 exon
GGAATTTATGCCCAGAGGAGAACTGACTCCCAGAAGGTCAAAGAGGATGTGGTCAATTATGCCCGTTTCAAGTGGCCCTTGCTCTTCTCCAGGTTTTACGAAGCTTACAAATTCTCAG
Seq A exon
GCCCTCCCCTCCCCAAGAGCGACGTCATCGTGGCTGTCAACTGGACGGGTGTGTACTTCGTGGACGAGCAGGAGCAGGTGCTTCTGGAGCTGTCCTTCCCGGAGATCATGGCTGTGTCCAGCAGTAG
Seq C2 exon
GGGAACAAAGATGATGGCCCCCAGCTTTACCCTGGCCACCATCAAAGGAGATGAGTACACCTTCACATCCAGCAATGCTGAGGACATCCGTGACCTGGTGGTCACCTTTCTGGAGGGGCTACGGAAGAGGTCTAAGTATGTGGTGGCACTGCAGGACAATCCTAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030761-'44-44,'44-42,45-44=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(1.1=2.5)
A:
NO
C2:
PF146041=SH3_9=PU(13.6=13.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCAGAGGAGAACTGACTC
R:
TTAGACCTCTTCCGTAGCCCC
Band lengths:
245-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: