DreEX6084382 @ danRer10
Exon Skipping
Gene
ENSDARG00000044632 | myo7ab
Description
myosin VIIAb [Source:ZFIN;Acc:ZDB-GENE-091110-4]
Coordinates
chr21:22258284-22259923:+
Coord C1 exon
chr21:22258284-22258401
Coord A exon
chr21:22259526-22259652
Coord C2 exon
chr21:22259754-22259923
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTGTTCATTCACAGGGC
3' ss Score
10.81
5' ss Seq
CAGGTGCAT
5' ss Score
4.89
Exon sequences
Seq C1 exon
GGAATCTACACACAGAAGAGGTTCGACTCGCAAAGAGTGAAGGAGGAGGTGGTGGATTTCGCTCGATTTAAGTGGCCTTTGTTATTTTCACGCTTCTATGAGGCCTTCAAATTCTCAG
Seq A exon
GGCCGAGTCTTCCAAAGAATGATGTTATAGTGGCTGTGAACTGGACGGGAGTCTACTTTGTGGATGAGCAGGAGCAGGTCCTTCTAGACCTTTCTTTCCCAGAGATCACTGCGGTCTCCAGCAGCAG
Seq C2 exon
AGGTGGAAAACTGCAGGGACAGAGCTTTACCCTGGCCACTATTAAAGGAGATGAGTACACCTTCACATCCAACAACGCTGAAGACATCCGGGATCTGGTTGTGGCTTTTCTAGAGGGCCTGCGTTCCAGGTCAAAGTTTGTGGTGGCAATGATGGACAGCCATTATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044632-'36-35,'36-34,37-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(28.3=85.0)
A:
PF0037313=FERM_M=PD(24.0=93.0)
C2:
PF0001823=SH3_1=PU(6.0=5.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGAAGAGGTTCGACTCGC
R:
AACTTTGACCTGGAACGCAGG
Band lengths:
246-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]