RnoEX6003844 @ rn6
Exon Skipping
Gene
ENSRNOG00000013641 | Myo7a
Description
myosin VIIA [Source:RGD Symbol;Acc:628830]
Coordinates
chr1:163015181-163016892:-
Coord C1 exon
chr1:163016775-163016892
Coord A exon
chr1:163015925-163016051
Coord C2 exon
chr1:163015181-163015350
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGCCTCTGTCACTGTCCCAGGCC
3' ss Score
6.5
5' ss Seq
TAGGTGGGG
5' ss Score
3.33
Exon sequences
Seq C1 exon
GGAATTTATGCCCAGAGGAGAACTGATGCCCAGAAGGTCAAACAGGATGTGGTCAATTATGCCCGTTTCAAGTGGCCCTTGCTCTTTTCCAGGTTTTATGAAGCCTACAAATTCTCAG
Seq A exon
GCCCTCCCCTCCCTAAGAGTGACGTCATCGTGGCTGTGAACTGGACGGGCGTCTACTTCGTGGACGAGCAGGAGCAGGTGCTTCTGGAGCTGTCCTTTCCGGAGATCATGGCTGTGTCCAGCAGTAG
Seq C2 exon
GGGAGCAAAACTGATGGCCCCCAGCTTTACACTGGCCACCATCAAAGGGGATGAGTACACCTTCACATCTAGCAATGCTGAGGACATCCGTGACCTGGTGGTCACCTTTCTGGAGGGGCTCCGGAAGAGGTCTAAGTATGTGGTGGCACTGCAGGACAATCCCAACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013641-'40-42,'40-40,43-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF146041=SH3_9=PU(13.6=13.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGGAGAACTGATGCCCA
R:
ACTTAGACCTCTTCCGGAGCC
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]