MmuEX6000748 @ mm9
Exon Skipping
Gene
ENSMUSG00000024388 | Myo7b
Description
myosin VIIB [Source:MGI Symbol;Acc:MGI:107709]
Coordinates
chr18:32129091-32131308:-
Coord C1 exon
chr18:32131191-32131308
Coord A exon
chr18:32130975-32131101
Coord C2 exon
chr18:32129091-32129254
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGGGGTTGCCTTCTGGCCAGGTC
3' ss Score
5.61
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GCCCAGTATACCCAGTCGAAAGCCACGCCACTGGCGGTGAGGGAGCAGACAGTGGAGGCTGCCCGTCTTCTGTGGCCCCTGCTCTTCTCCCGGCTATTTGAAGTCACCACACTCTCTG
Seq A exon
GTCCCCGCCTTCCCAAGACGCAGCTGGTTTTAGCCATTAACTGGAAGGGGATGTACTTCCTGGATCAGAAGGAGAGGACACTGCTGGGGTTGTCCTTCGCAGAGGTCATGGGTCTGGTCGCCAACAG
Seq C2 exon
GGACGCCCCAGGAGGGAAGAAGCTGCTTCTCGCCACACTCCAGGAAGAGTACGAGTTCGTCTCCCCCAGCAGCGTGGCTATTGCAGAGATGGTGGCCTTGTTCTTGGGAGGCTTGAAGGAGAGATCTGTGTTCGCCATGGCCCTGCAGGACAGAAGGGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024388-'30-32,'30-31,31-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=PD(10.3=25.0)
A:
NO
C2:
PF146041=SH3_9=PU(14.3=14.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTATACCCAGTCGAAAGCCACG
R:
TGGCGAACACAGATCTCTCCT
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: