DreEX6022046 @ danRer10
Exon Skipping
Gene
ENSDARG00000044441 | MYO7B (1 of 2)
Description
myosin VIIB [Source:HGNC Symbol;Acc:HGNC:7607]
Coordinates
chr6:28099543-28102551:+
Coord C1 exon
chr6:28099543-28099660
Coord A exon
chr6:28102161-28102287
Coord C2 exon
chr6:28102397-28102551
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTGTAATTTCAATGCTCAGGTC
3' ss Score
6.62
5' ss Seq
CAGGTCTGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
GGCCCCTTCATAACCTCTAGAACCAAGTCTGATAAAGTAAAAGCTGAAGTGGTTGACTTTGCTCGTCAGAAGTGGCCCATGTTCTTTTCCAAGTTTTTTGAGGTTGCCAAGTTATCTG
Seq A exon
GTCCTCCTCTACCAAAGAGCAAGTTCATCCTTGCCATAAATTCAACTGGAATAACTTTCCTTGATGAACGAGAAAAGAATCTTCTAATTCTGTCCTACCCAGAGCTCACCGGGGTCAACACTATCAG
Seq C2 exon
AGAAAGGAAGTGTGTTTGTTTGCTGACTCTGAAAGGAGACTTCACACTGAATGCAATCATGGCTGTAGAAATCTCTGATCTGGTAGCCATGTTTCTGGCAGGCCTCATACAACGTTCACAATATGCAGTGGCCCTACAGGAGGTCAACAGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044441-'31-34,'31-33,32-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0037313=FERM_M=FE(8.2=100)
A:
PF0037313=FERM_M=FE(8.8=100)
C2:
PF0037313=FERM_M=FE(10.9=100),PF0765312=SH3_2=PU(18.0=20.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCCTTCATAACCTCTAGAACC
R:
TCCTGTAGGGCCACTGCATAT
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]