RnoEX0057485 @ rn6
Exon Skipping
Gene
ENSRNOG00000015035 | Myo7b
Description
myosin VIIb [Source:RGD Symbol;Acc:1561153]
Coordinates
chr18:24756440-24758611:-
Coord C1 exon
chr18:24758494-24758611
Coord A exon
chr18:24758276-24758402
Coord C2 exon
chr18:24756440-24756603
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTGGGTTGCCTTCTGGCCAGGCC
3' ss Score
4.48
5' ss Seq
CAGGTAAAC
5' ss Score
7.82
Exon sequences
Seq C1 exon
GCCCCGTATACCCAGTCGAAAGCCACACCATTGGAGGTGAAGGAGCAGACAGTGGAGGCTGCCCGTCTTCTGTGGCCACTGCTCTTCTCCCGGCTATTTGAAGTCACCACACTCTCCG
Seq A exon
GCCCCCGCCTTCCCAAGACGCAGCTGATTTTAGCCATTAACTGGAAGGGGATGTACTTCCTGGATCAGAAGGAGAGGACACTGCTGGGGTTGTCCTTCGCAGAGGTCATGGGTCTGATCGCCAACAG
Seq C2 exon
GGACGCCCCAGGTGGGAAGAGTCTGCTTCTGTCCACACTGCATGAAGAGTACGAGTTCGCCTCCCCCAGCAGCGTGGCCATTGCAGAGATGGTGGCCTTGTTCCTGGCAGGCTTGAAGGAGAGATCTGTGTTCGCCATGGCCCTGCAGGACAGGAAGGCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015035-'41-52,'41-51,42-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF146041=SH3_9=PU(14.3=14.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGAAAGCCACACCATTGG
R:
TGGCGAACACAGATCTCTCCT
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]